PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G125100.1
Common NameB456_009G125100, LOC105767780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 181aa    MW: 20100.6 Da    PI: 7.1787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G125100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.2e-19756255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  Gorai.009G125100.1  7 RYRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLMCG 56
                        69******9.**********8.....556**********************87765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.63E-33666No hitNo description
Gene3DG3DSA:3.30.730.101.4E-33764IPR001471AP2/ERF domain
PfamPF008478.9E-12756IPR001471AP2/ERF domain
PROSITE profilePS5103220.877764IPR001471AP2/ERF domain
SMARTSM003808.6E-41770IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-20766IPR016177DNA-binding domain
PRINTSPR003672.9E-11819IPR001471AP2/ERF domain
PRINTSPR003672.9E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGRPQQRYRG VRQRHWGSWV SEIRHPILKT RIWLGTFETA EDAARAYDEA ARLMCGAKTR  60
TNFPYNPNDS QSASSKLLSA TLAAKLHKCH MAALQLAKKN AAKDPSATQC GHPLAAPSYT  120
VTGSNIGEMD CRQHIPGKKW DGYEESQVGG EQQFVPLEDD HIEQMIEELL DYGSIELSSN  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17871670ATERF1
3gcc_A2e-17871670ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442804.11e-135PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-70ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0D2UL121e-135A0A0D2UL12_G
STRINGPOPTR_0001s14720.17e-77(Populus trichocarpa)
STRINGPOPTR_0006s27710.11e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.19e-48ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]